rs220939149 SNP Detail

Summary

• ID
  rs220939149
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135666329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGCCAGT ATTTAGCATC
  ACAGTACATA GCAAAAGACC AAACCTCCAC ATTCCTGTCT CCTCCCAGTG CTAAAATTAC
  CCCATGCCTG GCTAATGGCA GGCTTTTGCT TCTTCCTTCC CAGGTTCCTT CCACACGAAT
  GTCCCACCCA CCTGTCTTTG CTGTTCTGTC CCAGCACAGC TTTTCCCCCA CCATATCTGG
  R
  GCACAGTCTG CTCATCAGTG AATAACCGGG TGCTCTCCAC TTTTGCCTTC TGCAGATAAC
  AATGCTAGGA CTAGAAGGAG ACCTGAGCTG GACCCAGGAT CCACTGGAGG GCGTCCTCAT
  CTCTCTGCCA CAGTTGCCAC CTACCGTTCT GCCGGTGGAG TTTGCGTGGA CTCTGAAGCT
  GACAAAGGTG AACTGATCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321353529	CHEV_4_135494933	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220939149					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135666329 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fuca1	fucosidase, alpha-L- 1, tissue			Intron
				Noncoding-Transcript-Variant
Rr602205	regulatory region 602205			97 bp proximal
Rr602206	regulatory region 602206			131 bp proximal