rs220881264 SNP Detail

Summary

• ID
  rs220881264
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101531401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGAGAGG TGGGGGAGGG
  TGACACACCC TTCCCCCCAC AGCATTTACT CTCCTGGCCA AGCCCTTTGG GGAAGGATTC
  TCATCTGGGT CCACAGTGAG CGATCAACAC TCAGATTTTT TTCCTTTTGA GTCCAGCAAC
  CCACTGGTTA CAATTTCCAT TTTGCTATCT CGTGTGTAAT TACTTCCTCT AGATTGAAAA
  Y
  ATTCACTCCT GGAGGGGTGC TCCCATAGAC CTAAGAAGAA AACACAACTC ACAAATCTCA
  GAAAGTTCCT GAAAATTTCA AGATTCATGC TCCCCTACCC TCAAGACTAT ATAAGCAGTA
  ACAATTTCAG GAGGTTCTGT GTAAATCTCC CTCAGGATGC TCAGGGAGGC AGCTTTCATG
  AGCTGTCACC CCTGTTGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321230910	CHEV_4_101346809	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220881264					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101531401 () rs orientation: forward

Symbol	Name	Function Class
Rr596196	regulatory region 596196	560 bp proximal
Rr596197	regulatory region 596197	1463 bp proximal