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rs220881264 SNP Detail
Summary
  • ID
    rs220881264
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr4:101531401 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACATGAGAGG TGGGGGAGGG
    TGACACACCC TTCCCCCCAC AGCATTTACT CTCCTGGCCA AGCCCTTTGG GGAAGGATTC
    TCATCTGGGT CCACAGTGAG CGATCAACAC TCAGATTTTT TTCCTTTTGA GTCCAGCAAC
    CCACTGGTTA CAATTTCCAT TTTGCTATCT CGTGTGTAAT TACTTCCTCT AGATTGAAAA
    Y
    ATTCACTCCT GGAGGGGTGC TCCCATAGAC CTAAGAAGAA AACACAACTC ACAAATCTCA
    GAAAGTTCCT GAAAATTTCA AGATTCATGC TCCCCTACCC TCAAGACTAT ATAAGCAGTA
    ACAATTTCAG GAGGTTCTGT GTAAATCTCC CTCAGGATGC TCAGGGAGGC AGCTTTCATG
    AGCTGTCACC CCTGTTGGGT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss321230910 CHEV_4_101346809 CHEVERUD SCREENING_POP f SNP C T
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs220881264 SNP C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:101531401 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr596196 regulatory region 596196 560 bp proximal
Rr596197 regulatory region 596197 1463 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory