rs220875567 SNP Detail

Summary

• ID
  rs220875567
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108044097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCATCTT ACCTACTCCA
  CAGAGTTTGT TGTTTTCGAA GTGAAAATAA CTTTAAAATT GTATAGCTTT CCCCCATCCA
  GAATAAGAAC AAATTAGGGC TGCTCTTTCT TCCTTCTAGG ATTTTATGAG CAGAAAATGG
  GATAATACAT TCTATAGCAG ATTTCAAAAG GTGAAGCAGG ATTTCAATGT GAGAAATAGC
  R
  CCCTCTCATC TATGACTCAT AGCCAGCAAC ACACATCTGC ATTTGCATTG ACAGTTTATT
  AATAACACAA GTAGATAATA CTCCATGTAC CAATGAGCTC TTAAGGCTTG GTCAAGATCA
  AACATTCCAG GATGTCTGCG AAGACCACCT ATTTTTTTTC TTTATTCATC AAATAGTCGA
  GTGACTATAA TATACCAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321891484	CHEV_6_108017130	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220875567					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108044097 () rs orientation: forward

Symbol	Name	Function Class
Rr399804	regulatory region 399804	1943 bp downstream
Rr399805	regulatory region 399805	1636 bp downstream
Rr399806	regulatory region 399806	1116 bp downstream
Rr636030	regulatory region 636030	1817 bp distal
Rr636031	regulatory region 636031	1312 bp distal
Setmar	SET domain without mariner transposase fusion	Intron