rs220863157 SNP Detail

Summary

• ID
  rs220863157
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121162346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCT GAGAGTTCAC TTCTTGGTCC
  C
  CAAGAAGCAG GCAGAGAAAG AACAC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320903128	CHEV_3_121071615	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220863157					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121162346 () rs orientation: forward

Symbol	Name	Function Class
Gm33363	predicted gene, 33363	340 bp upstream
Rr397973	regulatory region 397973	772 bp upstream
Rr397974	regulatory region 397974	1492 bp upstream
Rr584057	regulatory region 584057	464 bp proximal
Rr584058	regulatory region 584058	923 bp proximal
Rr584059	regulatory region 584059	1511 bp proximal
Tssr31438	transcription start site region 31438	885 bp upstream
Tssr31439	transcription start site region 31439	950 bp upstream