rs220859240 SNP Detail

Summary

• ID
  rs220859240
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:9551118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAATATATC ATATATGAAT
  AGTATGAATA TATTAATATA TTTTATAATA TATTATATGA TTTATTTTCA TTTATCTATT
  CACATATAAA TGTTTTACTT TGTTTATATT CATATAATAC ATTATATATG TATATATTTA
  TATTATAATT ATATATACTA AAATATATTT ATATATTAGT TTTCTTTATA TAACTATATT
  T
  ATATAATTTA TGCATAACAT ATTATACAAT ATGTTATAAA ATATTTCATA TTTTATATAA
  TATATTATAA GATATAGATA TATATGTATA TATGCTGGAT AAATGAGCCA AGTCAAGTCA
  GTATTCAAGA GCACTGGCTG CCTTCCCAGA GAACCAGGGT TCAATTCCCG TCACCCACAT
  GGAAGCTCAC AACTGTTTGT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	LEWES/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ZALENDE/EiJ
ss353047946	MGP_WTSI_2_9467934	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	LEWES/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ZALENDE/EiJ
rs220859240					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353047946	MGP_WTSI_2_9467934	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:9551118 () rs orientation: forward

Symbol	Name	Function Class
Rr372745	regulatory region 372745	332 bp downstream