rs220845854 SNP Detail

Summary

• ID
  rs220845854
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97873207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCTTCCT AGCTTAGGGC
  ATGAGCTTTG ACCTGTGCTC CTGCTGTGAC CTGCTGCCTT CCCCTAAGGT CCAAGTCAAT
  ACAACTACCT AATTTTGTGA AAACTCCAAA ACAGGAGCCA TTTTCTGATC CTCCTCTGTG
  TTAGTTCATC ATTTCAGCCC TCAAAACCAT GAGACCAAAT AAACCTTGCT TTCCTGATGA
  Y
  GTAACCTACG TCAGGTGTTT CACTTCCATA GCACAAGGCT GATACTGTTT GATTTCTGGT
  CGCCAGTGGA TTCCACAAAG TGCCCAAGTT TACAAGAGAG GCAGGTCTTT TGTGTGTGTG
  AGTGACATCA CCAAACCAGG CAGTGTGACT TCAGCATCCT GGATTGTAAG GTCCACAGAC
  AGTCCTGGGA CCATATTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395125751	MGP_WTSI_15_97805757	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220845854					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395125751	MGP_WTSI_15_97805757	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97873207 () rs orientation: forward

Symbol	Name	Function Class
Col2a1	collagen, type II, alpha 1	276 bp downstream
Rr508999	regulatory region 508999	1533 bp distal
Rr509000	regulatory region 509000	1485 bp proximal
Tssr4707	transcription start site region 4707	1562 bp downstream
Tssr132910	transcription start site region 132910	277 bp upstream
Tssr136189	transcription start site region 136189	342 bp downstream
Tssr136190	transcription start site region 136190	373 bp downstream
Tssr136191	transcription start site region 136191	586 bp downstream
Tssr136192	transcription start site region 136192	692 bp downstream
Tssr136193	transcription start site region 136193	734 bp downstream
Tssr136194	transcription start site region 136194	782 bp downstream
Tssr136195	transcription start site region 136195	798 bp downstream
Tssr136196	transcription start site region 136196	817 bp downstream
Tssr136197	transcription start site region 136197	830 bp downstream
Tssr136198	transcription start site region 136198	1352 bp downstream
Tssr136199	transcription start site region 136199	1398 bp downstream
Tssr136200	transcription start site region 136200	1416 bp downstream
Tssr136201	transcription start site region 136201	1472 bp downstream
Tssr136202	transcription start site region 136202	1526 bp downstream
Tssr136203	transcription start site region 136203	1951 bp downstream