rs220831579 SNP Detail

Summary

• ID
  rs220831579
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145124397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCTTTGG TTGTTAGGCA
  ATGTGTACAG AGAGTGTTTC GTCAGTGCCT TGAAACCTCA AAGCATCAAA TGCTCATGTG
  CTTGAATGCT TGGTCCTCAA CTGCTTAGCA GTGTCTTGAA GGCCATGTAG CCTTTAGAAA
  GTATTCTTTA CTAAAGGAAG TGGTTCACTC AGGGAAAGTC TTGTGGGTTA TAGCCAGCTG
  Y
  AGTGCTACCA TACTCCCCTT CTCCTCCTCC TCCTCCTCCT CCTCCTCCTC CTCCTCCTCC
  TCCTCCTCCT CCCACTCCCC CTCCTATTCT ACCTATAGGT TCACCAAAAA AGTCAAGAGT
  CCAATCCACA CTTTTCCACT GGACACTGGC ATACTTTCTC CATGGTGAAC TATATCTTTA
  ACTAAGAGCC AAAATAAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321008303	CHEV_3_145081606	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220831579					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145124397 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530034A14Rik	RIKEN cDNA 9530034A14 gene			598 bp upstream
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
D530037P16Rik	RIKEN cDNA D530037P16 gene			684 bp upstream
Rr586779	regulatory region 586779			609 bp distal
Rr586780	regulatory region 586780			410 bp distal