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rs220822043 SNP Detail
Summary
  • ID
    rs220822043
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:144112284 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CGAGAGCTCA AGAAGTGGGG
    TCCCACTTGT CTGGGTCTCC TTGGTCAGAG AATGAGCGTG CAGAGACACC CCGTTGGAAA
    GCCATCTCTA AAGGGGTGGT TGAGGGAAAA CCTCGGGATC TTGCTGGGGT CCGAGCCCCA
    GAGAAGATCC ACCCAGCCCA AGGAGGCCGG CGGGAACCTC CAGCCCAGGT AGCGAGCGAG
    R
    AAGGGATCTC ACCTTGCTGC GGTCCTCCTC CTGCTGCTCC AGCAACTCGG GAACCGCGGC
    CATGGCGACG CGGGCCTCGA GCAGGGGCCG TGTGGCTGTG CGAGGAAAGA AGAGGCTGGG
    CCGCCGCCGG GGCGCCTTTC AGGGGCGGCC GCGGCCCCGC CTCCGCCGGC CTCCTTGCCG
    GACGGCGGCT GGAGGCCGCG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss355978221 MGP_WTSI_2_144096100 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs220822043 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss355978221 MGP_WTSI_2_144096100 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:144112284 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi12351 CpG island 12351 within coordinates
Mgme1 mitochondrial genome maintenance exonuclease 1 540 bp upstream
Rr397362 regulatory region 397362 387 bp upstream
Rr397363 regulatory region 397363 1052 bp upstream
Rr566424 regulatory region 566424 852 bp distal
Rr566425 regulatory region 566425 within coordinates
Rr566426 regulatory region 566426 198 bp proximal
Rr566427 regulatory region 566427 588 bp proximal
Snx5 sorting nexin 5 Intron
Noncoding-Transcript-Variant
Tssr20524 transcription start site region 20524 210 bp upstream
Tssr20525 transcription start site region 20525 258 bp upstream
Tssr20526 transcription start site region 20526 514 bp upstream
Tssr20527 transcription start site region 20527 647 bp upstream
Tssr20528 transcription start site region 20528 1264 bp upstream
Tssr26594 transcription start site region 26594 296 bp upstream
Tssr26595 transcription start site region 26595 76 bp downstream
Tssr26596 transcription start site region 26596 140 bp downstream
Tssr26597 transcription start site region 26597 416 bp downstream
Tssr26598 transcription start site region 26598 472 bp downstream
Tssr26599 transcription start site region 26599 488 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory