rs220761651 SNP Detail

Summary

• ID
  rs220761651
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32791633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTT CGTTGTTGAG ACAGGGTCTC
  S
  GGGATCCGAG GCTGCACTTG TCCCG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320698806	CHEV_3_32636406	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220761651					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32791633 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13062	CpG island 13062	within coordinates
Gm9859	predicted gene 9859	within coordinates
Mrpl47	mitochondrial ribosomal protein L47	729 bp upstream
Ndufb5	NADH:ubiquinone oxidoreductase subunit B5	Intron
Rr367422	regulatory region 367422	429 bp downstream
Rr575021	regulatory region 575021	403 bp distal
Rr575022	regulatory region 575022	within coordinates
Rr575023	regulatory region 575023	264 bp distal
Tssr28770	transcription start site region 28770	402 bp downstream
Tssr32937	transcription start site region 32937	707 bp upstream
Tssr32938	transcription start site region 32938	702 bp upstream