rs220744599 SNP Detail

Summary

• ID
  rs220744599
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52936534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTGTCGA CTTCCCCACT
  GCAGTTACAT TGTTGCCCTT TCTATATACC AGTGTGGGTA TGGTCACTCA GACAAGCCCA
  CCTTCGAGGA CCAGAGGATA AAGTTATACT CATGGAGAAG AGTAGAGAAC GGATAGTAGT
  AGTGTTTGTG TGTTGGGGTG GAGGGATATA CCTACGTATA TTCATTGGAA TATATCCAAT
  R
  TAGAAATATA TATTTTTCTA TCAGGGAAAC TAGTAATTTT TAAGCCGTCA AATAATGGAA
  ACAAAGTTGA TGAGCTCCTT GAAGTACCAA ACTATACCCC GGAGGCCCCA GCAGGTGTCG
  CTGTTGAGAG AGATTGAGTC TGTCTTTGGC TGAACACTGA AGTCCTTGAT AGACCTGCAA
  AGTACCCTAT CCATTACTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320766566	CHEV_3_52833035	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220744599					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52936534 () rs orientation: forward

Symbol	Name	Function Class
Rr576621	regulatory region 576621	296 bp distal
Rr576622	regulatory region 576622	21 bp proximal
Rr576623	regulatory region 576623	104 bp proximal