rs220730338 SNP Detail

Summary

• ID
  rs220730338
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:4748482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCTTCAGC GTACGAACGA
  GCAAATGAAA CGGGCGAACA GGCGAACCTG TGAACGGGGC GAACGGGGCG CTTCATGCGC
  CACAAACCAG CCCGAACTAC GGTGATACCC AAAACCGATT CGTGTTTCAC GTATTCAATT
  TGGAAAGCTG CAGGAGAGTA ACCAAACGCA AAAGCGCAAC AAGAGTGAAT TTAGAAAATG
  M
  GCTACAAACT GCGGCACAGG CATAAGACCT GCAGCCTCTT AAGTGACACA GAAAGTAGCG
  TTGGGAAGAC GAGAGAACGT ATCTCTCCTT GGTGAGGGGA CAACACAGTT CACCTTTCGG
  GTCAAAACTG GCTCCGTTTT CCTGTCGGAC GGCTATCTGC ATGATGGTGG TGGTGCTGGT
  GGTAAACAAA ATGGAGCCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367234354	MGP_WTSI_6_4698482	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220730338					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367234354	MGP_WTSI_6_4698482	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4748482 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17126	CpG island 17126	within coordinates
Peg10	paternally expressed 10	Intron
Rr626054	regulatory region 626054	1377 bp distal
Rr626055	regulatory region 626055	1066 bp distal
Rr626056	regulatory region 626056	1266 bp distal
Rr626057	regulatory region 626057	within coordinates
Sgce	sarcoglycan, epsilon	1302 bp upstream
Tssr1771	transcription start site region 1771	1128 bp downstream
Tssr1772	transcription start site region 1772	1041 bp downstream
Tssr1773	transcription start site region 1773	1030 bp downstream
Tssr54763	transcription start site region 54763	1110 bp downstream
Tssr54764	transcription start site region 54764	869 bp downstream
Tssr59725	transcription start site region 59725	1452 bp upstream
Tssr59726	transcription start site region 59726	1426 bp upstream
Tssr59727	transcription start site region 59727	1350 bp upstream
Tssr59728	transcription start site region 59728	1298 bp upstream