rs220661268 SNP Detail

Summary

• ID
  rs220661268
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:10313348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGCTCTT GCTTCTTTAG
  TTTCTCTTGA CAATTTTATC ACAGATATCT AAGATGCCTT TATTAATTGT TTCAGTCAAA
  ATTCCTTCGA TTTATATGTA CTGGCATTTC AAGTCCCATG TTTATTAAAC CTCTGTCAAA
  GGGGTATAAT AATTCCTTTT ATCAGAATAT TACCCTTAGC AGAGGTACAA CTGAGGGCAT
  Y
  AACTCAAACA AACAAACAAA CTAAAAGCAA AACCAAAGAA TTATTGATAG ACTATTATAG
  CAACCACTGG GTGCTGGGAA ACAAATAGCA AGTTCCATTG TTGAGATGAT CAGTCTACTA
  TGGGTAAACT GGTAACACAA ATAATAAAAT ACAGGGAAAG TATATATTAT AAATAAATGC
  TGCATTTCAA CTGGAGGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320653144	CHEV_3_10248288	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220661268					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:10313348 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fabp12	fatty acid binding protein 12			Intron
				Noncoding-Transcript-Variant
Rr397603	regulatory region 397603			1157 bp upstream
Rr573595	regulatory region 573595			805 bp distal
Rr573596	regulatory region 573596			1012 bp proximal
Rr573597	regulatory region 573597			1271 bp proximal