rs220639739 SNP Detail

Summary

• ID
  rs220639739
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152656109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATACACAG CGCTTGGGTG
  ATTCTGGAAG TAAACCTGAA GTGAACAGGG TTATACGTGA GAGATACCAA CTAAAGCAGA
  ATAGAAAGCT AACTCAAGCT CTTCCATTTA ATCTGTTGAG ACCGCTCATG TCTCTCTTAC
  TAGGAGGCTT CCACACAGAC AGGAAGCGTA GGGTGTGTTA GCTACTTTGT GACTGCTGTG
  C
  TAAGACCACA GCCAAAAGCA GCTTGAGGAA GAAAGGGCTT ATTAAAACTT CAGATCATCA
  CTTAGAGAAG CCAAGGTAGG ACATCAGTGC AGGAACCCGG AAGCAGACCT TAAACTGGAG
  CCTGTATAAA GGTGCTGCTC ACTGGCTGGC TCGCTCAGTT TGATTTCTAA TACCATCCAG
  GACCAAGTGG AGCACCATGC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321029342	CHEV_3_152613436	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220639739					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152656109 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Rr587634	regulatory region 587634	within coordinates
Rr587635	regulatory region 587635	633 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron