rs220585678 SNP Detail

Summary

• ID
  rs220585678
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113600492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCaaaaaaa aaaaaatata tatatatata
  tGAggctcat gcctgtaatt ccagcactct ggagtcagag gcaggagatc actcttaagt
  ttgaagctgg tttggtctgt acacggaatt ccagaccagc cagggggaaa caatgctacc
  M
  aaaaaaaaaa aaAAAAAAAA ATCCAACTgc ccttggtccc tgttctctgg agtctgaggc
  agggagatct ttgagttcag gacaagccgg atatacataa tgagttctag gcctacatag
  tgagacccta cctcaaaGCA AGTCTTTCTg                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911152	CHEV_6_113573525	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220585678					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113600492 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17851	CpG island 17851	140 bp proximal
Rr636555	regulatory region 636555	50 bp proximal
Tssr58233	transcription start site region 58233	457 bp upstream
Tssr58234	transcription start site region 58234	517 bp upstream
Tssr58235	transcription start site region 58235	595 bp upstream
Tssr58236	transcription start site region 58236	1136 bp upstream
Tssr62461	transcription start site region 62461	within coordinates
Vhl	von Hippel-Lindau tumor suppressor	463 bp upstream