rs220578392 SNP Detail

Summary

• ID
  rs220578392
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17025986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATTGAGT TGCTCATTTG
  TAATCTCAGC AATTCAGAGG TGGAGGCAGG AGGATTAAGA GTTCACAAAA GGTCACCATT
  AGCTACAGAG CAAGCTTGAA GCCAGCCTGG GATACATGAC ACCTTATGTA AAAATAAAAA
  CAAAACAAAC AAACAAAAAT GTAAGTCAGA ATTCTATCAC AAGCCCCGTT AAAAGAAAAC
  R
  TGGTAAATAA ATGCAACGTG TGAGAGAGGT TCCTTCCTGA GTCCTGTAAG ATTGGCGTCT
  ACGGTCCATA GCACTAGGGT GTCGGATGTA GCTAAGCTGC AGATCTGTAT CCCTGTGTTT
  TAGGCTGGTC CCACCCAACC GTGCAAATGT CAGTCACCTA CAGAAGAGTT GTGTTCACTG
  CAAGAAACTC AGTCTCCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321753282	CHEV_6_16975987	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220578392					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17025986 () rs orientation: forward

Symbol	Name	Function Class
Rr626745	regulatory region 626745	1638 bp proximal
Rr626746	regulatory region 626746	1753 bp proximal