rs220569418 SNP Detail

Summary

• ID
  rs220569418
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110253213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAACCATC CTGTGAGGCA
  GCGGTGAGTA GGTCCAAACT TGAGTTTGTG ATAAAGAGAC CCTAATGTGA TTACATTGGT
  GTCGGCTCCT TGGTTGTCTT TTGGGGTTCA TGAACACTTC CTGGCACAAC ACTGGATAGC
  CCAGGCTGAT GTTAGACTCA CATCAATCCA ACTTCAGCCT CCCCAGTGTT CAGATTTGCA
  R
  ATATGGACCT CCGAGCCAGC TTTACTTCTT TTACTTACTC TGTTAACTGT AATCGAGGCA
  TCTTGATATG TAGCTGTCCT CCCCTTTTAC CTCCTCCAAC TCCCTCCTCC CCTACCCCCC
  CCCCAGCATC CTCAACACGT CCCCTCCCCC ACCTCATGTC TTCTCTGAGT CCTGTTAGCG
  CCACCGGTTG CAAAGCTGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378902820	MGP_WTSI_9_110326649	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220569418					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378902820	MGP_WTSI_9_110326649	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110253213 () rs orientation: forward

Symbol	Name	Function Class
Klhl18	kelch-like 18	1781 bp downstream
Ngp	neutrophilic granule protein	1133 bp downstream
Tssr3023	transcription start site region 3023	1763 bp upstream
Tssr3024	transcription start site region 3024	1745 bp upstream
Tssr3025	transcription start site region 3025	1656 bp upstream
Tssr3026	transcription start site region 3026	1607 bp upstream
Tssr3027	transcription start site region 3027	1510 bp upstream
Tssr3028	transcription start site region 3028	1444 bp upstream
Tssr3029	transcription start site region 3029	1428 bp upstream
Tssr3030	transcription start site region 3030	1417 bp upstream
Tssr3031	transcription start site region 3031	1225 bp upstream
Tssr87368	transcription start site region 87368	1867 bp downstream
Tssr87369	transcription start site region 87369	1849 bp downstream
Tssr87370	transcription start site region 87370	1799 bp downstream
Tssr87371	transcription start site region 87371	1771 bp downstream
Tssr87372	transcription start site region 87372	1701 bp downstream
Tssr87373	transcription start site region 87373	1661 bp downstream
Tssr87374	transcription start site region 87374	1639 bp downstream
Tssr87375	transcription start site region 87375	1616 bp downstream
Tssr87376	transcription start site region 87376	1610 bp downstream
Tssr87377	transcription start site region 87377	1596 bp downstream
Tssr87378	transcription start site region 87378	1545 bp downstream
Tssr87379	transcription start site region 87379	1500 bp downstream
Tssr87380	transcription start site region 87380	1283 bp downstream
Tssr91619	transcription start site region 91619	1815 bp upstream
Tssr91620	transcription start site region 91620	1711 bp upstream
Tssr91621	transcription start site region 91621	1632 bp upstream
Tssr91622	transcription start site region 91622	1570 bp upstream
Tssr91623	transcription start site region 91623	1135 bp upstream