rs220562297 SNP Detail

Summary

• ID
  rs220562297
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109767159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTGACGC CCTCTTCCGG
  AGTGTCTGAA GACAGCTACA GTGTACTTAC ATATAATAAA TTAAAAAAAA AAAAAAGATG
  CTGCAAGCAT TTGTGTGTGT GTGTATGCAC GGGATTGTAA GAGCATTGAA GTTAAGGTCC
  CTCTACATTA TATTTATTCA TTCATTTAAA CACAAATTCT CCTACTGAAT CTGGAGCTTG
  Y
  AGTTTTGGCT ATCCTGGCTG GCCAGGGAGT CCCCGGGACC CACCCCTCTC TGTGCTCCTG
  TAGCCCTGGG GTTACATGCC TGTTCCCATA CCCAGCTTTT TCCAAGGGTC CCTGGGGATC
  TGAACTCAGA ACTTCATGCT TGCACAGAAA GCACTTACCC ACTGAGCCAT CATCACAGTC
  CCCATTTTTT TTTTTTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322394806	CHEV_7_117311466	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220562297					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109767159 () rs orientation: forward

Symbol	Name	Function Class
Gm72506	predicted gene, 72506	112 bp downstream
Rr1426	regulatory region 1426	1431 bp downstream
Rr653207	regulatory region 653207	1470 bp distal
Rr653208	regulatory region 653208	1249 bp distal
Tssr2368	transcription start site region 2368	1693 bp upstream
Tssr74254	transcription start site region 74254	1589 bp upstream