rs220540371 SNP Detail

Summary

• ID
  rs220540371
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:147159495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTGGAAC AGTGTGCTTG
  GAATAAAAAA ACAACCACTG AAAATAAACA AACAAACAAA AAACCCTCAG AAAACAAAAT
  AAAAAAAAAA AACCAAAGCA AACAAGAAAC AACTTTGGCT GCTTTATAAC TACACTCCAC
  TTTGATTCTT CTCTCTTGAA AGAATAAGAA TGAAGGCAGC TTCGTTAATC ATGAGTACAG
  R
  TCTATCTCCT TATAAGAGCA GAAAGCTGAT GTGAGTTTTG TGTGTAAGGT ATGAGAAGGA
  AAGGGTATTC CCTTCATAGT TACAACATTC ACCGAGCTCA AATAGTGGAC TGGGGGAAAT
  TAAAACCAAA AGCAAGTGAC CTAAATTTGT GACAGGATGT GATGTAGGTT AAAAACAATA
  AGACTTGACT AGAAGGTATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	PWK/PhJ	SPRET/EiJ	WSB/EiJ
ss360143802	MGP_WTSI_3_147116823	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	G	G	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	PWK/PhJ	SPRET/EiJ	WSB/EiJ
rs220540371					SNP	A	A	A	A	A	A	A	A	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360143802	MGP_WTSI_3_147116823	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:147159495 () rs orientation: forward

Symbol	Name	Function Class
Rr587151	regulatory region 587151	1430 bp distal
Rr587152	regulatory region 587152	1471 bp proximal