rs220538994 SNP Detail

Summary

• ID
  rs220538994
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83575471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGATGTT TACGTAAAGC
  CCTTCTGTGC ACAGTTGTCA TGACGCCTAA TGTGTGATAC CAGTAAAAGC AGCTGTCAGT
  GGATGGGTGG CTGACATAGT TTTTGGCAAT TGACAGCATT GAAAAAACCT AAAATGGGAT
  GATGGCTGTC AATATCAGAC AGGTTAAGTG AACTTAATGT ACATTAACTT ATATTTAGTA
  W
  AATCAGTGAA ATGCTCTGGT GCTTTTAAAA CTAACATGGA AATAAATATA TGTATATATG
  TATATAATAT ACAAACATGT GTATATATGT GCATAGAATA TTTATTTGTA TAATAGTTAT
  GTATATATGC ATGCATTTGA GGGAAATGGA AATGTTTTAT ATAAAACGAC TATATACATG
  TGTAAAAGTA AATATTATGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321844683	CHEV_6_83548483	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220538994					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83575471 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17607	CpG island 17607	540 bp proximal
Rr632898	regulatory region 632898	86 bp distal
Rr632899	regulatory region 632899	198 bp proximal
Rr632900	regulatory region 632900	352 bp proximal
Rr632901	regulatory region 632901	1251 bp proximal