rs220536116 SNP Detail

Summary

• ID
  rs220536116
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132740229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAACAAGG CTGGATTTTA
  GGATAGGCGC TGGGAAAAGG GGAGACTGCG GAGGGAGGAG CCCCTCCCCT CCAGCCCCCA
  AATCCCAAGG TTCCGTTGGC GCTCTGGGAG TTGAGGGGCG GGGACCTAAT GACCCGGAGG
  GGGTGTGGGG CGGAGGAGGG ATTTGGGGGC GGCCTGGCCA GAGGGGTTGG GCCGCGTGCC
  S
  GGTTACCTGG CGAACAAAGT CGGCTCACTT TTGCATAAAT AAATAAATAA TCGTGTATCA
  ATACGTTTCC TCTAGGGCTC TGATTGAATC GGCCCCCTCT TCCCCAGGGG GTGGGGTGCT
  GAGTGACAGC TGTCAGCCCC CTAGGTCGGG AGCTGGGGTG AGCTGCTGAA TCTCTGCTTT
  CTGGCTGAGG GCGCCTTCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321338146	CHEV_4_132568833	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220536116					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132740229 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ahdc1	AT hook, DNA binding motif, containing 1			Intron
				Noncoding-Transcript-Variant
Cpgi14982	CpG island 14982			within coordinates
Rr601154	regulatory region 601154			1402 bp distal
Rr601155	regulatory region 601155			1228 bp distal
Rr601156	regulatory region 601156			704 bp distal
Rr601157	regulatory region 601157			within coordinates
Rr601158	regulatory region 601158			1998 bp proximal
Tssr39436	transcription start site region 39436			1426 bp downstream
Tssr39437	transcription start site region 39437			1372 bp downstream
Tssr39438	transcription start site region 39438			1096 bp downstream