rs220526454 SNP Detail

Summary

• ID
  rs220526454
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132741311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACATTCTG TCCGCTCTCG
  CTGTTGCCGC TGGCAGGGCA GGGGCATGAG CCCAGGCCTG GGCAGAGTCC TGCCAGGAGC
  ATTCGGGGTG TTTCTATTGT TGACTTGTCC CCGTTCAGTG TGGCCCGGTG TGTGTGTCTG
  TGTGCGCCAG GGCTGTAAGT GAAAGATTAC CAGTCTGTTC ATCCCCCCCC CACCCCCCCC
  R
  CCCCCCCAGC ATGGGAGGAG CAGGCAGGCT CGGCTGTGGT GTTCAGCTGT GGAGGGACCC
  TCGAGGTAGC ACATGCATGC CACTTGTTAA ATCGCCTTCC TTTGAGCAGA TGTATATTTA
  TTTTTATTGT AATGGAAAAA CCAAACGGGA TAGTAAGTTG AATTCATTTC CCCTGTGTTG
  ATAGCTGGAG TAATCCCCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321338149	CHEV_4_132569915	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220526454					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132741311 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ahdc1	AT hook, DNA binding motif, containing 1			Intron
				Noncoding-Transcript-Variant
Cpgi14982	CpG island 14982			859 bp distal
Rr601156	regulatory region 601156			1786 bp distal
Rr601157	regulatory region 601157			within coordinates
Rr601158	regulatory region 601158			916 bp proximal
Rr601159	regulatory region 601159			1761 bp proximal