rs220515230 SNP Detail

Summary

• ID
  rs220515230
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:73112476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGGCTAGG GAGAATTGGA GCATGTCCCT
  AAAATTCAAA ATTTGTCCAA TACCTTTGCA TACAGGTTCA CATCGAGGGA AAAAGTGTCG
  AGTACCCAGA TTTATTTAAA AGATTTTCTC TATTAAGGGT AAGAAGAATG ACATATTTCA
  Y
  GTCTGGATTT GTGGAGTTTC CTTTGGATTC ATTGAATTTA GAGGATTCCT CTTAGGCTAC
  TTACTAGATC ATGCCCAGTC CCATGCCTCA GTATCGCCAG CACATGCAGA CACAGTGAGC
  TTCGGGAAGG CTGTTGTTCC ATGTTTGTGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320344752	CHEV_2_73120189	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220515230					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73112476 () rs orientation: forward

Symbol	Name	Function Class
Cir1	corepressor interacting with RBPJ, 1	969 bp downstream
Rr559124	regulatory region 559124	120 bp distal
Rr559125	regulatory region 559125	171 bp distal