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rs220514244 SNP Detail
Summary
  • ID
    rs220514244
  • Variation Type
    SNP
  • Alleles
    A
Genome Location and Flanking Sequence
  • Location
    Chr18:77591116 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGGCTTACTC ACTTCGGTCT
    GACACTCATC ATTTCCCACA CTGAGCTTTG TCCCAGGGAA CCTGGTCTTA GGAAGGCCCT
    CCAGAGTGGA AATGGGGTCC TGGTTATCTG CAACCCCGGC CTGGAAAATG TTTGAATAAT
    AAATAAATGT TTATACATTT ATAATATATA AATAATAAAT TAATAAATAA ATTAATTAAT
    A
    AATGTGGGAG TGTAGCTGGC ATCTCCTCAG AGTTGCACAG AAATATATGA GGAACACAAG
    GATGGGTTGC TGGCCCTGGG CCTGGGCAAC TGTGGAAATG TCTAGTAGGC TACCTAAAAC
    GGAAGCCTCA CTCTTGTGCG GGTTTCGGTT TATACGTCCA TGGAGATGGA CTTTCATGAC
    TCTGTTAGTC ATTACCACTT                                            
    
    A = A
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss325701886 CHEV_18_77742159 CHEVERUD SCREENING_POP f SNP A A
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs220514244 SNP A A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr18:77591116 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Ark2c arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C Intron
Noncoding-Transcript-Variant
Cpgi10275 CpG island 10275 874 bp distal
Rr541132 regulatory region 541132 820 bp distal
Rr541133 regulatory region 541133 1519 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory