rs220505820 SNP Detail

Summary

• ID
  rs220505820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:21860357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAGACAA TTTTCCATTT
  ATTTCTCAAT AGTTCTGCAC ATTGCATAAG CAGAGATACT GCTACTCTTC CACTCCAAAA
  TATCTTTACA AAGATATTTA TATGACAAAT AGCCTTGAAA TATAGATATT GTGTGTCTTT
  CTAACCAAAG GGCAGATAAG CTCCTGATCT AGCATAATAA AAAAGAAAAG AAAAGAAATA
  Y
  CTCTCTTTCT CTACTTTTGT GTCTGAAGCC AAGGTCAAGA ATGCTTAGTG GATAGTCTAC
  ATGATTCAGG TTCCCTCCAT TCAGGTTTAT CCAAAAGCAA GTTTATTTGA TGAGTAGGTA
  GCATTGGAGT CCTTTTCTTT CATCAGGTAG GAAATGGGTC TTGGAGAATG ATGTACAAAT
  GCCAGTTTTC TGGGAATTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320683323	CHEV_3_21705115	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220505820					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:21860357 () rs orientation: forward

Symbol	Name	Function Class
Gm65770	predicted gene, 65770	within coordinates
Rr574150	regulatory region 574150	471 bp proximal