rs220500415 SNP Detail

Summary

• ID
  rs220500415
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110365551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAACCATC TTGCTGTGGA
  AGCTGTGATG TGTCACACTG GGTACCACAT TGTATCTTTT TGCCCACCAT CTTTACTTGC
  AAATGATCTG GTTCAAGGTC TCTGGCTTCT GCTACACTAT AGATACTGGC TCCTCACCTG
  GACTCCTCTT GGATACTATG TTGAGGCCCT GTGTTTTAGA GATCCTGCAG CTTTGGATCT
  K
  TAGGACTGGC CCCTTCACAT GTTCTAGCAG TTCATAGATG GGGTAGATGT TGGGGTGGGC
  CAACTCAAAG TACTGGGTCT GGGCCTGGAT GGAAGCTGAG TTGGTCAGCT TTTTGCCCAG
  GCGAGGGGTA GGGCCAGCTC TTCCAGTTGC TGCATCTGAT GAGAAACAGG GCCAGCTCTG
  CACAGCTCTC AGATGTCAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322398742	CHEV_7_117909858	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220500415					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110365551 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	1862 bp upstream
B430319F04Rik	RIKEN cDNA B430319F04 gene	333 bp downstream
Rr653308	regulatory region 653308	1449 bp proximal
Tssr68503	transcription start site region 68503	1719 bp upstream
Tssr68504	transcription start site region 68504	1762 bp upstream
Tssr68505	transcription start site region 68505	1794 bp upstream
Tssr68506	transcription start site region 68506	1825 bp upstream