rs220486163 SNP Detail

Summary

• ID
  rs220486163
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:34725230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTTCAAC TCGCCCCACA
  AAGCCCCATG ACTTTGGGCA GTCAACTTAA CTCTGAGTCT CAGTTTCTCT ATAAAATAAA
  AGAACATTTG CTTCTCTCTC TTGCTGAGAG GAGAAAATGG GTTCATTAAC AGGTTCATTA
  ACAGGCTCAT TAACAGTGTG TGTGTTTGGG GCTGGGGGGG GGGGGGTAAA TGGTGTTTGC
  Y
  CCGCCCTCCA GGAGGCACTG TGTGCTGCAG GTTCCAGGCT AGCCATCCCC TCAGGTATCC
  TTTTAGGCAA AAGCAAAGTC TCTGAACTGA CGAGGTCAGA CTCAAGCTCA TAGAAGTTAT
  CGCAATTCAG AATGGTCCTT CAGACGGACG CAAGCTAGGA ACTGGTTAGA AATGCCAACC
  TCTAAATGTC TTCTTTTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402329725	MGP_WTSI_19_34822320	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220486163					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402329725	MGP_WTSI_19_34822320	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:34725230 () rs orientation: forward

Symbol	Name	Function Class
Rr546785	regulatory region 546785	552 bp distal
Rr546786	regulatory region 546786	113 bp distal
Rr546787	regulatory region 546787	242 bp proximal
Slc16a12	solute carrier family 16 (monocarboxylic acid transporters), member 12	541 bp upstream
Tssr156164	transcription start site region 156164	1517 bp downstream
Tssr159005	transcription start site region 159005	715 bp upstream
Tssr159006	transcription start site region 159006	644 bp upstream
Tssr159007	transcription start site region 159007	611 bp upstream
Tssr159008	transcription start site region 159008	579 bp upstream
Tssr159009	transcription start site region 159009	517 bp upstream
Tssr159010	transcription start site region 159010	495 bp upstream
Tssr159011	transcription start site region 159011	381 bp upstream
Tssr159012	transcription start site region 159012	362 bp upstream
Tssr159013	transcription start site region 159013	336 bp upstream