rs220477968 SNP Detail

Summary

• ID
  rs220477968
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129188329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTGAGGCA AAAACGCGAT
  GAAGAGGTTC AACAGTACAG GGTAGGCCCT TGGCTGTGCA ACAGACAAGT TTTATTATGT
  AGTTCAGGTT GGCCTGGAGA CCTTGAGAAA CTTGAGACCT TCCTGCCTCA GCCCTCTGAG
  TGCTGGGACC ATAGGTGTGT GCCACCACAC CCAGCTGAAG GGACATATTT TAGCTCAAGG
  R
  AAGTCTGATG TCCTTCTTTT CTCCTTCTGA GACAGGGTCT CTCTGTGTAG CCCTGGCTGT
  CCTGGAACTC ACTCTGTAGA CCAGGCTGAA CTCAGACTTC CAGATCCACC TGCCTCTGTT
  TCCTGAGTGT TGGGACTAGA GGTGGGGCAT ACCACACCCA GATAGGTCTA ATAATGTCTT
  TGGGGCTAGG GGTTACTTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321311700	CHEV_4_128971780	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220477968					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129188329 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14888	CpG island 14888	377 bp distal
Rr600195	regulatory region 600195	688 bp proximal
Rr600196	regulatory region 600196	1369 bp proximal
Sync	syncoilin	Intron