rs220475805 SNP Detail

Summary

• ID
  rs220475805
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:30909050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTCCTGG ACCATTGAGA
  AAGGCACTGG GAGAGTGTAG GCTGGCTCCT AGGAGCTACC GCTCCAGCCC TCTTCTAGCA
  AGGCACCACT CCACCGAAGG ATGGCACTGC CTGCTCTGTC AAGCCTAGCA GGCAAGGTTG
  TTGTACAGTT AGTTAGTTTA GAGAGATGTA TGGCTGGCTC TGTTTGATGT TCACACTCCA
  S
  AGATGGTGGC TGCTGTTTTT TTTAGACCCA TGAACTAACT GCATACCTAC TATTGTTCCT
  TCCCTCCTTC TCCACAAAAG GGATTCCCCC AGCCATTTCT GGCAATCTTC CATCTCTGCC
  CCTGGGGAGC TCTGGGCTGA AGCACCTCAC AACCTCACTG GATTTCATCA TTTCTCCTTT
  CTTCCAGGAT GTTTCCTCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357427601	MGP_WTSI_3_30753823	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220475805					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357427601	MGP_WTSI_3_30753823	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30909050 () rs orientation: forward

Symbol	Name	Function Class
Gm42199	predicted gene, 42199	within coordinates
Gpr160	G protein-coupled receptor 160	1049 bp upstream
Rr574830	regulatory region 574830	90 bp distal
Rr574831	regulatory region 574831	495 bp proximal
Rr574832	regulatory region 574832	1010 bp proximal
Rr574833	regulatory region 574833	1125 bp proximal
Rr574834	regulatory region 574834	1457 bp proximal
Tssr28695	transcription start site region 28695	829 bp upstream
Tssr28696	transcription start site region 28696	1045 bp upstream
Tssr28697	transcription start site region 28697	1103 bp upstream
Tssr28698	transcription start site region 28698	1113 bp upstream