rs220462150 SNP Detail

Summary

• ID
  rs220462150
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19527345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGAGAAA AGGGGGTCAT
  TATGAATATG TGTTTATTAA ATCAGTGAGT CCTGGATCTT GGATTACTTC TGTAATGCAA
  CTACACGATG TGACATGCCT CACTTGTATT TCTGTATTGG TATCAAAATT GTTGGAAATA
  TTGAAGATTC TAAAAGAAGT AAGCTGTACG AAATAGCACT CCTTAGCTAA TAATTCAAAG
  Y
  TGCCTGTATA CTCATGAAGA GACAGCTATA GAAATAAGCA CAGGTTAGCA TGCTCTGGTG
  CATAGTGCAG AATTAAAATT CAATTCTCTG GAAACTGTCA GAGAATCTTC AAGTTAAAAG
  TAAATTTTCC AAGCAAGGAA TAGCTTATGA GGTCATCACT AAGAAATCAC ATCCTGGGGT
  TGGGAATTGC TGATCGGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387895131	MGP_WTSI_13_19435044	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220462150					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387895131	MGP_WTSI_13_19435044	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19527345 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc4	T cell receptor gamma, constant 4	1383 bp upstream
Trgj4	T cell receptor gamma joining 4	963 bp downstream
Tssr118539	transcription start site region 118539	1477 bp downstream
Tssr118540	transcription start site region 118540	1404 bp downstream
Tssr118541	transcription start site region 118541	1348 bp downstream
Tssr118542	transcription start site region 118542	1270 bp downstream
Tssr118543	transcription start site region 118543	1234 bp downstream
Tssr118544	transcription start site region 118544	1214 bp downstream
Tssr118545	transcription start site region 118545	1188 bp downstream
Tssr118546	transcription start site region 118546	1106 bp downstream
Tssr118547	transcription start site region 118547	1033 bp downstream
Tssr118548	transcription start site region 118548	1014 bp downstream
Tssr118549	transcription start site region 118549	436 bp downstream
Tssr118550	transcription start site region 118550	267 bp upstream
Tssr118551	transcription start site region 118551	1025 bp upstream
Tssr121588	transcription start site region 121588	1466 bp upstream
Tssr121589	transcription start site region 121589	83 bp downstream
Tssr121590	transcription start site region 121590	1149 bp downstream