rs220447545 SNP Detail

Summary

• ID
  rs220447545
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74794262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAATGAGA ACGCTGCCCA
  AATGTGTCTA CTGAGCTGCG AAGCATACAT GAGGCAATGA GCTAAACTGT CTAATTGTAT
  CTGAAAGAAA AAAATACATA AGTTATTTAA AATATTTAGT TAGGTGTAGT TGTGCCTGCC
  TGTAATCCAA GTATTGGGGA GTCTGAGGCA AGAGATTACA ATAAAGCCAC TTGAGTCTCA
  T
  CTTATGATTC TGGGTTTGAA GGCACCATTC TGTATGTTCC TAAATTATTT GTTTTCAAGA
  TGTTTTAGGT CTGTATAAAA TGGGGCTAAT TGTTTTGGAT TATGAGTGGG CTACTGTTTC
  AATTATTTAT TCACAGGCTG GAGAAAATAG GGTCCTTTTC ACACATACCC ACACTGTCAG
  TAACACCGTT CATCCTTGAG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320348854	CHEV_2_74801975	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220447545					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74794262 () rs orientation: forward

Symbol	Name	Function Class
Gm75057	predicted gene, 75057	1538 bp upstream
Igs15	intergenic site 15	within coordinates
Rr559413	regulatory region 559413	350 bp proximal
Rr559414	regulatory region 559414	616 bp proximal
Rr559415	regulatory region 559415	1182 bp proximal
Rr559416	regulatory region 559416	1557 bp proximal