rs220401055 SNP Detail

Summary

• ID
  rs220401055
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:11158011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTATTCT AAAACTTGAG
  ATGGATTTTC CTGCTTATCT TGGACAACAT CTTTGAGTTT TTCAAAATTT CCTAGTTTTA
  AGGCTACTTT TCTTAGGCCT GCCAAAAGGC ATGTAATAAA CCTGTCTCTG GCTAACATAC
  CATCTGCAGA ATTATAATCC CATCCAGTAT CCTGGTCAGG CACTGCCTTT GATCCGATTG
  K
  ATATGCTCTG TTTGATGAAT TTTGTCTGCA TGCATTTTCA TTTGCTCCCA AACTCACCTG
  CATTCCCCAG GAAGTAAGTT ATTAGTAGTA TCATATGTAC ATCATGGAAA GTCAAGCTAT
  AAGACTGAGT AGGCAGAGGA GCTAGAGGTA TAAGAACCCA GCCTCTTTTC CATCTGAAAA
  AGTTCCCTCA GTGAGAAAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320654982	CHEV_3_11092951	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220401055					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:11158011 () rs orientation: forward

Symbol	Name	Function Class
Rr573653	regulatory region 573653	1364 bp proximal