rs220377296 SNP Detail

Summary

• ID
  rs220377296
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:106798318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    acccaccca cccactccca ccttactgcc
  ctagcatcca cctatgctgg ggcatctagc ccccacagga acaaggacct cctctcccat
  tgatacTTTT CTATTATGTC CTCTTGCTCA CAAATAGATT CTTCTTATGA TTCCCCTtct
  Y
  tctgtctctc tgtctctctg tgtctctgtc tctgtttctc tctgtctctc tgtctctctc
  tctctctctc tctctctctc tctctctgtg tgtgtgtgtg tgtatgtgtg tgtgtgtTTA
  AACAGCACTA ATCAGAATTC AAAGTATAAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321886904	CHEV_6_106771351	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220377296					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:106798318 () rs orientation: forward

Symbol	Name	Function Class
Rr635975	regulatory region 635975	460 bp distal
Rr635976	regulatory region 635976	1070 bp proximal
Rr635977	regulatory region 635977	1153 bp proximal