rs220345053 SNP Detail

Summary

• ID
  rs220345053
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19527996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTAGGCC AAAAGCTGAT
  TTATACATGA AAATCTTTTA AGAAAAAAAA TTTCTTCTTA TAGTTTTTAA AGTTCCTATT
  GATCATAGAA GAAGTGTTAA GATACATACA TAAGCACAAA CACCTGCTAC CATCACTCAT
  GGCCATTATT CTGTAAATTT TCCATTCAAT CATTTGCCTG AGTATACTTT AATTATGTTT
  M
  CACAATCAGG GTAGAGTAGG TACACAACAC TGATTCTGAG TGTTTTTCAC TTGGTACTAT
  GCTACAAAGA TTCTTCCCAG CTATTGTTCT TAAATTACTC ATAGTTGCTT GTACCACAAA
  GATAATTACC TCCATCTTTA GTGGGTAACG CTGTAAGATT AATATAAAGA CTGAGTATTT
  TTAGTAGAAG TTGTAGATTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387895151	MGP_WTSI_13_19435695	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	A	C	C	C	A	C	C	C	C	C	C	C	A	A	C	A	C	A	A	C	C	C	A	A	C	C	A	C	A	C	C	C	C	C	C	A	A	C	A	C	A	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220345053					SNP	C	C	C	C	A	C	C	C	A	C	C	C	C	C	C	C	A	A	C	A	C	A	A	C	C	C	A	A	C	C	A	C	A	C	C	C	C	C	C	A	A	C	A	C	A	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387895151	MGP_WTSI_13_19435695	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19527996 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc4	T cell receptor gamma, constant 4	732 bp upstream
Trgj4	T cell receptor gamma joining 4	1614 bp downstream
Tssr118541	transcription start site region 118541	1999 bp downstream
Tssr118542	transcription start site region 118542	1921 bp downstream
Tssr118543	transcription start site region 118543	1885 bp downstream
Tssr118544	transcription start site region 118544	1865 bp downstream
Tssr118545	transcription start site region 118545	1839 bp downstream
Tssr118546	transcription start site region 118546	1757 bp downstream
Tssr118547	transcription start site region 118547	1684 bp downstream
Tssr118548	transcription start site region 118548	1665 bp downstream
Tssr118549	transcription start site region 118549	1087 bp downstream
Tssr118550	transcription start site region 118550	367 bp downstream
Tssr118551	transcription start site region 118551	374 bp upstream
Tssr121589	transcription start site region 121589	560 bp upstream
Tssr121590	transcription start site region 121590	498 bp downstream
Tssr121591	transcription start site region 121591	1363 bp downstream
Tssr121592	transcription start site region 121592	1943 bp downstream