rs220335271 SNP Detail

Summary

• ID
  rs220335271
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163381852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCCAAATC CTGGCTTCTA
  CCCTGATCGT TCCCCAGACC ATCCGCTCAC CAAACCTCCT AAGTTTTTCC CGTCAGAACC
  TCCCACAATA CACTGCTGTC TGTCCAGAGC TGTTTCCATG ACCCTGTGCT GCCAGTTTCT
  CTTGAGCATT TGCTGTGTTG GGAAAGTTTT GAAAGGATGG GGTAACCTTG GGACCAGGAA
  Y
  ACAAGTTCTG GAGTTAGGTT GGATTTGAGC CGGACAACTT ATTTCCTATC AACTGTGTGA
  GCTTGGGTGA AGAACTCAAC CTCTCTGGGC CAGCTGTCTT AACAAACCGC TCATGAAAAC
  GCCCAGCATC AGAGCAGCGT GAGAATTCAG GAGCGAAGCT CCTGACACAG ATGTCCACGC
  CATTCATGTC TCTGACGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320603598	CHEV_2_163365668	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220335271					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163381852 () rs orientation: forward

Symbol	Name	Function Class
Hnf4a	hepatic nuclear factor 4, alpha	Intron
Hnf4aos	hepatic nuclear factor 4 alpha, opposite strand	within coordinates
Rr569404	regulatory region 569404	within coordinates
Rr569405	regulatory region 569405	296 bp proximal
Rr569406	regulatory region 569406	860 bp proximal
Rr569407	regulatory region 569407	1728 bp proximal
Tssr27298	transcription start site region 27298	1783 bp downstream