rs220324149 SNP Detail

Summary

• ID
  rs220324149
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54824713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATCTCAT TTAAAATAAA
  ATAAAAATGT AGGGGGAGCT GAATGAGCTG TATTGTCAAG AGAGCAAGTT CAAAGACGCT
  TCTCTCCAAA CATTTGTACT CCAGAGCTCA CCTACTTTTT GTTTGCTTGA TTTTGAGATA
  AGGGCTCACT CTATGACCTA GGCTGGTCTT TGACCCACTG TGTAGCCCAA GCCCATCTCA
  M
  AATGATGGTC TTTCTGATTT AGCATCCCAA GTGCCTGGTT GGTAAACCTC AACCATTTGC
  TCATTGCCAC TTCTATGAAT TCAGTTACAT CATCTACTGA CCGCTATGCT TGTTGCTTTC
  TTTGTCATTG TGACACAGAC CAGAGTAACC CAAAGAAAGG AGCCTCTATT GAGAAAGTGC
  CTCCATCAGA TCTGCCTATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358019104	MGP_WTSI_3_54721214	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220324149					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358019104	MGP_WTSI_3_54721214	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54824713 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13182	CpG island 13182	1125 bp distal
Gm31358	predicted gene, 31358	within coordinates
Rr576864	regulatory region 576864	1771 bp distal
Rr576865	regulatory region 576865	1451 bp distal
Rr576866	regulatory region 576866	1275 bp distal
Rr576867	regulatory region 576867	1389 bp distal
Rr576868	regulatory region 576868	863 bp distal
Sertm1	serine rich and transmembrane domain containing 1	1405 bp upstream
Tssr33288	transcription start site region 33288	1465 bp upstream
Tssr33289	transcription start site region 33289	1408 bp upstream
Tssr33290	transcription start site region 33290	1271 bp upstream