rs220324142 SNP Detail

Summary

• ID
  rs220324142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108284763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTCCAAAAT GACTTCCCTC TTTTCCCAAA
  TCCCCAGCAG TTCACTGTCT GGCAAAGGAG TGACATCTGG CAGCTTGCTA GGGTAGAGGG
  AGAGAGATGT AGAAGGGAAG ACTGCACGTG TTCAATACCA CAATTACCCT GAGCTCCATG
  Y
  TGTCAGGATG TATTACCCAC CCACCCAAGC CAGGGGGGGG GCACACTGGA GTGACCCACC
  TGCACGATTG TGTGtgcgtg cctgtgtgcc tgcttgcctg cgtgcctgct tgcctgcTCT
  GGCAGGTGTT TGGGCAGATG AATTCTCCAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321892334	CHEV_6_108257796	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220324142					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108284763 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636072	regulatory region 636072	1028 bp distal
Rr636073	regulatory region 636073	186 bp distal