rs220321025 SNP Detail

Summary

• ID
  rs220321025
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19367464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCCAAGA GCCCTGGCAG
  GTATTTTATA TACAGTATTT TTACCCAACA CATAGTAATT TGATCTTATT TATACAAATG
  AGCAGTCCCT TTCCAAAACT AAGTCACTTC CTTAGTAAAC GCTGGTCTGA CTTGAGAGCC
  ATGTCTTCCA CCATAGCATG CAGTATTATG TTTTCTGTAT TGTTGGGAAG GCATTAGGGT
  K
  CATCAGAGGA ACTCCAGAAA GGGTGAGGGG AGATGTTAAA GAGAGATTTC AAGAGATTGG
  CTCAAGATTG CTAAAGCTGA TGTCTAGAGA GTAGATGGAC AGACAGACAG TAATAGTGGA
  CTTTGCATTC TGGGATCTGA AACTGATAAG AGAAAACTGC CAGGCTGAAA AGATAGGCAG
  GATTTCTTTC TATGCTGGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357153169	MGP_WTSI_3_19213300	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	T	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220321025					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	T	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357153169	MGP_WTSI_3_19213300	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19367464 () rs orientation: forward

Symbol	Name	Function Class
3110037C07Rik	RIKEN cDNA 3110037C07 gene	1474 bp downstream
Cpgi13002	CpG island 13002	1312 bp distal
Gm66414	predicted gene, 66414	within coordinates
Pde7a	phosphodiesterase 7A	1978 bp upstream
Rr573969	regulatory region 573969	1989 bp distal
Rr573970	regulatory region 573970	1653 bp distal
Rr573971	regulatory region 573971	345 bp distal
Tssr28512	transcription start site region 28512	1827 bp downstream
Tssr28513	transcription start site region 28513	1805 bp downstream
Tssr32697	transcription start site region 32697	1986 bp upstream
Tssr32698	transcription start site region 32698	1956 bp upstream
Tssr32699	transcription start site region 32699	1922 bp upstream
Tssr32700	transcription start site region 32700	1897 bp upstream
Tssr32701	transcription start site region 32701	1087 bp upstream