rs220292633 SNP Detail

Summary

• ID
  rs220292633
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:71150526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCCTTCC CCAGCTCTTG
  TTATTTTGGG GTTTTTTCTT TTAATGTGAG CAAGCGCTTA ACATGGGTAG GCCATCAGGA
  TTTATAGCAG TGTGTGGCTG TGACCTTTGA TCCAGCTTTG AAGTGAACAT AATTCTTTAC
  CCACCTTCAT TTGTACTACG GCCAAGCCAC CCTCTGGCAC CTTCCCTTCA CTTCCGTACA
  M
  CCTCTGGGTC TTCTGTGTCA CTTACCAACT TTTGTTTGAG TGTTCTTTTT TTCTGGAGCA
  GAGACTTTCA CATTTAGGCA AACTTCAGTG TGCAAGAATG TCCTACTCTC TAAAACCGCC
  GTCCAGAAGC TGTAGTGCAC CTTGGCTTCT TAGCTGCGGC AGGAAAGCAC AGGACAGGCC
  TTCAACAACA AAGGAGCCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398923209	MGP_WTSI_17_71192871	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220292633					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398923209	MGP_WTSI_17_71192871	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:71150526 () rs orientation: forward

Symbol	Name	Function Class
Gm41610	predicted gene, 41610	1443 bp upstream
Rr530331	regulatory region 530331	within coordinates
Rr530332	regulatory region 530332	337 bp proximal
Tgif1	TGFB-induced factor homeobox 1	674 bp downstream
Tssr149212	transcription start site region 149212	1431 bp upstream
Tssr149213	transcription start site region 149213	1023 bp upstream
Tssr149214	transcription start site region 149214	1267 bp downstream
Tssr149215	transcription start site region 149215	1499 bp downstream
Tssr149216	transcription start site region 149216	1634 bp downstream