rs220258680 SNP Detail

Summary

• ID
  rs220258680
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:134341385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAGGCATG GATTTTAGCA
  ACCCCTTGCC TAAGGATGAC CCAAGGCTAA CAAGCAATTC AGAAGGGGGT GGGTAACCAA
  AAACAACTGG TGACCCCCCC CCCCAACATA AAAGAAAGGC CTTACGGAAA TGACTGCGGA
  CAGAAAGTTT TTTGTGCCTC CAGGGTGTGA GGCAAGATTC CCAGGGAGCA AGCAACAAAG
  R
  AGCCCGAGGC AACTCTCAAA AAAAAAAAAA AAAAAAGAAA AGAAAAGAAA AAGAAAAAGA
  AAGAAAAGCC TGCTATAGGA AATACCAACC ACCCCAAATC CCAAGCCAGA TGTTTATGGG
  TACTGTACCT GCACCTTATT TACACTGCAC CCCCTTATTT ACAAACTAAC TTTGCCCAGG
  AAACCAGGCA GGCTGGGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366807820	MGP_WTSI_5_134788401	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220258680					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366807820	MGP_WTSI_5_134788401	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134341385 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi16718	CpG island 16718			862 bp proximal
Gm71761	predicted gene, 71761			840 bp downstream
Gtf2i	general transcription factor II I			Intron
				mRNA-UTR
Rr399401	regulatory region 399401			935 bp upstream
Rr621987	regulatory region 621987			164 bp distal
Rr621988	regulatory region 621988			80 bp proximal
Rr621989	regulatory region 621989			1234 bp proximal
Tssr49086	transcription start site region 49086			1115 bp upstream
Tssr49087	transcription start site region 49087			1142 bp upstream
Tssr49088	transcription start site region 49088			1448 bp upstream
Tssr53628	transcription start site region 53628			14 bp downstream
Tssr53629	transcription start site region 53629			684 bp downstream
Tssr53630	transcription start site region 53630			1256 bp downstream
Tssr53631	transcription start site region 53631			1875 bp downstream
Tssr53632	transcription start site region 53632			1912 bp downstream
Tssr53633	transcription start site region 53633			1925 bp downstream
Tssr53634	transcription start site region 53634			1954 bp downstream
Tssr53635	transcription start site region 53635			1983 bp downstream