rs220252790 SNP Detail

Summary

• ID
  rs220252790
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72858871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCAACAG TAACAGACCA
  ATCTTGGACC ATCCAAAACT GCCAGGCCCT CCCTCAATCA AGAAAATGAG CCCACAGGTT
  TGCCTACAGG CCACGTGGGT GGGACACTTT CTCAACTGAG ACTCCCTCTT CCCAAATGAC
  TCATGTTGAC AAAAACCACC TACCTTCCTT ACTCAGTACC ATGCTCTCTA GTCATGCCCC
  M
  CCCCCCAACC CCCAGTCCTT TGAGACAGGG ACTCTGTGTA AGAGTTCTGG CCATCCTAGA
  ACTTACTATG TATATCAGGC TAGCCTTTCT AGTCTCTTCT ATCCCATGTC CTCCCACTTC
  AGTGTTGAGA ATTCTCCAGA GCTTAATGAT ACAGTCTCCT TAGTCCACAA GCTCTGCTGT
  CCCAGCAGGC ACTCTACCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368759374	MGP_WTSI_6_72831882	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	C	C	A	A	C	A	A	A	A	A	C	C	A	C	C	A	A	A	C	A	A	A	A	A	C	C	A	C	C	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220252790					SNP	A	A	A	A	C	C	A	A	C	A	A	A	A	A	C	C	A	C	C	A	A	A	C	A	A	A	A	A	C	C	A	C	C	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368759374	MGP_WTSI_6_72831882	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72858871 () rs orientation: forward

Symbol	Name	Function Class
6030456E01Rik	RIKEN cDNA 6030456E01 gene	1717 bp downstream
Kcmf1	potassium channel modulatory factor 1	Intron
Rr632324	regulatory region 632324	325 bp distal
Rr632325	regulatory region 632325	852 bp proximal