rs220251265 SNP Detail

Summary

• ID
  rs220251265
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:75943582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTAGACC AGGCTGGCCT
  CGAACTCAGA AATCCACCTG CCTCTGCCTC CCAAGTGCTG GGATTAAAGG CGTGCGCCAC
  CACGCCCGGC CTATGTTCTT TCTACTAATA AAAATTCCCT ACTTTGGGGC TAGAGAGCAG
  TATCAGTTGT TAAGAGTACT TATTCTTGTA GAGGATCTAG TTTTAGTTCT AGCACCTACA
  R
  TGTGACTCAT AACCACCTAC TGTGCAGTAT TTAGTACCTT CTTCTGCCCT CTGCGGACAC
  TTGCACTCTG GAGGTGCACA TACTCATACA TATAAAATAT ATTTAATAAA TATTTTAGAA
  TTAAAAAAAT CACATGTTAA ATCAGAATTT TTTGATGAAA CACCAAATTA CTCATTCAGT
  TTCCAATCTG GATTCCCATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321169685	CHEV_4_75671249	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220251265					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:75943582 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594066	regulatory region 594066			684 bp distal
Rr594067	regulatory region 594067			314 bp proximal