rs220247041 SNP Detail

Summary

• ID
  rs220247041
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180430618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGAGGAA GTCAGCCTGC
  AGTGCGGCAG CTATCCAGGA CCTCATTGGC AGAACTGGAT TGTCGCTATC TGGCTGCAGA
  GGGAGATCAG ATGCCTGCCC ACTGGGAACA TGAAGTGTGG AGTGATGGGC ATGGTGTTCT
  CTTATCTGTG AGCTTGGGGA TATCTGATGC CTGTCTGGAT CTCCCCTTCT TCCCCCCCCC
  S
  CCCCCCCCCC GCCCTCCGCC CTCCGCCAAT CTTCCTTTCT GTGACTTCAG AGCCTGAGCA
  GGAGAAGCGC TGACAAGGAA AGCGTGAGAG AGCACATGGC AGGGACCATA AGCCTGACAG
  GGGGCAGAGA GCCAGATCCC CTCAAGATCT GTGAAGGAGA CAAGCTGGGC TCATTACCTA
  TTCCATTTTG CGGGAAGAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S5/SvEvBrd	C57BL/6J	CE/J	CZECHII/EiJ	MA/MyJ
ss356767096	MGP_WTSI_2_180523530	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S5/SvEvBrd	C57BL/6J	CE/J	CZECHII/EiJ	MA/MyJ
rs220247041					SNP	G	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356767096	MGP_WTSI_2_180523530	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180430618 () rs orientation: forward

Symbol	Name	Function Class
Gm75401	predicted gene, 75401	within coordinates
Rr572846	regulatory region 572846	1803 bp distal
Rr572847	regulatory region 572847	1875 bp distal
Rr572848	regulatory region 572848	within coordinates