rs220213753 SNP Detail

Summary

• ID
  rs220213753
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130550169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTGAACC GCTGATATCC
  TGACCGTGAA GATTGAAATC ACCCCCAAAG AAGTATTTCT AAACAGGCCC ATATCCACCT
  TAGCCGTAGT AACCCTCCCT TCTACTTCCT TTGGTGGGTG ATGAGCTAGA AGGGAGGTTA
  AAGCAGTTAA GAACACTTAT TAAAGTAAGG TTTGAAAAAT CTAAGCCTAT GCCACCATGC
  M
  CAGCTAATGG AGACTCTTTA ATTTATAGTA CTTATATGAC TACCCTGTGA AAAAAAGAAA
  GAAAGAGAAA AAAAAAAACC AGTACAGTAA CAAGATGAAA ACTATGTGAG CAAATGTGCT
  TTCAAATAAT CCTAAACTGT ACCAGACCAA AAAAAAAATC ATTTTTGCAG TAAATTTCAG
  TGACAGGATT CAAAGGCTAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ	WSB/EiJ
ss359722452	MGP_WTSI_3_130459438	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	A	C	A	C	C	C	A	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ	WSB/EiJ
rs220213753					SNP	C	C	C	C	C	C	C	C	C	C	C	A	C	A	C	C	C	A	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359722452	MGP_WTSI_3_130459438	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130550169 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13827	CpG island 13827	1473 bp distal
Gm42997	predicted gene 42997	within coordinates
Gm43524	predicted gene 43524	941 bp upstream
Rr585206	regulatory region 585206	888 bp proximal