rs220204934 SNP Detail

Summary

• ID
  rs220204934
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136036870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGCAGAC GAAGGTCAGA
  GGAAGAAAGT GAGTGTCCTG CTCTTCCACC CTCCGCCCTG GAGCTAAACT GGCAGCAAGC
  TACAGCAATT CTCCGGTTGC AGTCTACATC AGCACTGGAG TTTACAGGTG CATGCGGTCA
  CGCCAGGCTT TTTACTCAAG TGGATGGAGA TTCACAGTCA GGTTTTTTTT TTGTGGGGGG
  R
  CGGGGTTTCG AGACAGGGTT TCTCTGTATA GCCCTGGCTG TCCTGGAACT CACTCTGTAG
  ACCAGGCTGG CCTGGAACTC AGAAATCCGC CTGACTGCCT CCCGAGTGCT GGGATTAAAG
  GCATGCGCCA CCACTGCCGG GCCACAGTCA GGATTTTAAA CTTGCATTTG AGCCGTCTCT
  CCAGCCCCTA GGACAGGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321354946	CHEV_4_135865474	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220204934					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136036870 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15109	CpG island 15109	725 bp proximal
Gm13013	predicted gene 13013	1673 bp upstream
Hnrnpr	heterogeneous nuclear ribonucleoprotein R	1383 bp upstream
Rr367756	regulatory region 367756	25 bp upstream
Rr602347	regulatory region 602347	893 bp proximal
Rr602348	regulatory region 602348	1477 bp proximal
Tssr39700	transcription start site region 39700	1377 bp upstream
Tssr39701	transcription start site region 39701	1393 bp upstream
Tssr39702	transcription start site region 39702	1432 bp upstream