rs220170790 SNP Detail

Summary

• ID
  rs220170790
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19527117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTAGAAT AATGACTGCA
  GGTGCACAAA CTCCTTAACA TAAAATCTGG CCTTCAAAAT GTTTTCCAGT GTTTTAAGTT
  CACAATATTT CCTGCTCTGT AGCTTGACTC TTTACATGGA CGCTTACATT AACTACTTTA
  TTACTAATGT TTTCAATTTG TGTAATTACA TGAAGCATCA CAGAAAGGTA ATGTTCTGTA
  R
  TAGAGCCAAA CTTACCTCCT CCCCCCCTCA AGAGAAAAGG GGGTCATTAT GAATATGTGT
  TTATTAAATC AGTGAGTCCT GGATCTTGGA TTACTTCTGT AATGCAACTA CACGATGTGA
  CATGCCTCAC TTGTATTTCT GTATTGGTAT CAAAATTGTT GGAAATATTG AAGATTCTAA
  AAGAAGTAAG CTGTACGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387895125	MGP_WTSI_13_19434816	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220170790					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387895125	MGP_WTSI_13_19434816	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19527117 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc4	T cell receptor gamma, constant 4	1611 bp upstream
Trgj4	T cell receptor gamma joining 4	735 bp downstream
Tssr118539	transcription start site region 118539	1249 bp downstream
Tssr118540	transcription start site region 118540	1176 bp downstream
Tssr118541	transcription start site region 118541	1120 bp downstream
Tssr118542	transcription start site region 118542	1042 bp downstream
Tssr118543	transcription start site region 118543	1006 bp downstream
Tssr118544	transcription start site region 118544	986 bp downstream
Tssr118545	transcription start site region 118545	960 bp downstream
Tssr118546	transcription start site region 118546	878 bp downstream
Tssr118547	transcription start site region 118547	805 bp downstream
Tssr118548	transcription start site region 118548	786 bp downstream
Tssr118549	transcription start site region 118549	208 bp downstream
Tssr118550	transcription start site region 118550	495 bp upstream
Tssr118551	transcription start site region 118551	1253 bp upstream
Tssr121588	transcription start site region 121588	1238 bp upstream
Tssr121589	transcription start site region 121589	311 bp downstream
Tssr121590	transcription start site region 121590	1377 bp downstream