rs220160453 SNP Detail

Summary

• ID
  rs220160453
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136025176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTCTGGA GAGATGGCTT
  TGTAGTTAAG AGGGCTTTTT TGGGAGGTAG AGGCAGGTGG ATCTGTGTGA GATTGAAGCC
  AGCCAGGTCT ACATAGTTCT AGGACAGCCA GGACTACAAA CGAAACAACT TTCTCAAAAA
  ACAAAAACAA AAACAAAAAC AAAAACAAGA GAGAGAGAGA GAGAGAGAGA GAGGGTTCAG
  Y
  GGCTGTTCTT CCAGAGTTTC TGAGTTCAAT TCCCAGCAAC CACATGGTGG CTCACAACCA
  TCTGTAATGA GATCTGACGC CCTCTTCTAG TGTGTCTGAG GACAGCAACA GTGTACTCAC
  ATATATAAAA CAAATAAATA AATCTTAAAA AAAAAAGAAG AAGAAGAAAG GAAAGAAGCG
  AAAAGAAGAA GAAAACTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NZO/HlLtJ	RIIIS/J	SEA/GnJ	SPRET/EiJ
ss363388194	MGP_WTSI_4_135853780	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	C	C	T	T	C	C	C	C	T	T	T	T	T	C	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NZO/HlLtJ	RIIIS/J	SEA/GnJ	SPRET/EiJ
rs220160453					SNP	T	T	T	T	C	C	T	T	C	C	C	C	T	T	T	T	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363388194	MGP_WTSI_4_135853780	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136025176 () rs orientation: forward

Symbol	Name	Function Class
Rr602345	regulatory region 602345	1020 bp distal