rs220157478 SNP Detail

Summary

• ID
  rs220157478
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107781277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAACATTT CAAACCTTTG
  TCTTCTAAGT AGAGAACAAG ATCAACAAAC GCCTCCACAG TTCTAGATTT ACTGAACAAT
  AGTCATACTT ATTTCACCAA TATAATTTGT TAGGCAGAAT ACTTTACTCA TACTAGGTCC
  GTGTAGCATT CCCCAAGCCT GAAGTCTTTG AAGTGTGTGG CTTCGCGGGG CGGGGGGGGG
  T
  GGGGGTGGGG TGGGGTGGGG GGGGGATAGG GAACTTTCGG GATAGCATTT GAAATGTAAA
  GAAAATATCT AATAAAAATA TTATTAAAAA TGTATAACTG GAAATTGGGG GTGCATGCCT
  GTAATCTGAA GGAGAGGCAG AGGCAGAGTG TCAAGAATTC TAGCCTATAT TCAGCTACAT
  AGCGAGTTGG AAGCCATCCT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	BALB/cByJ	C57BL/6J	CE/J	CZECHII/EiJ	FVB/NJ	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	RIIIS/J	SPRET/EiJ	SWR/J
ss362771519	MGP_WTSI_4_107596685	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	BALB/cByJ	C57BL/6J	CE/J	CZECHII/EiJ	FVB/NJ	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	RIIIS/J	SPRET/EiJ	SWR/J
rs220157478					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362771519	MGP_WTSI_4_107596685	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107781277 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14548	CpG island 14548	308 bp distal
Cpt2	carnitine palmitoyltransferase 2	491 bp upstream
Rr597091	regulatory region 597091	1627 bp distal
Rr597092	regulatory region 597092	within coordinates
Rr597093	regulatory region 597093	457 bp distal
Tssr42698	transcription start site region 42698	585 bp upstream
Tssr42699	transcription start site region 42699	563 bp upstream
Tssr42700	transcription start site region 42700	465 bp upstream