rs220152164 SNP Detail

Summary

• ID
  rs220152164
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:115895190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACACACAC
  ACACCACTCA CACGCTCTCG CCGCCCGCCC GCTCGCTCAG CGCTGGGACA CGCGCGGCCA
  GACACGCACA CACGCACGCA CACACACTCT CACACACGCA GAGGCACAGG GGGGAAAGAA
  GCCGGTGAAT AATTTTGTTA CTATTTTTTA AAATACTGGC CGCCATCATC ATCAAGCAAC
  Y
  AGCAGCAGCC AGCTCAAAGG GAGAGAAGGC ATGGGGCAGG GCCCTGTAGG AGAGGATTTA
  TATCTAGGTA AGTGTTGGAG ATTTAAACCT ACCCTTTGCG CCATCAGTCT GCGCTCCAAT
  AAACTCCTGG ATGTGTCGTA TATTTAATAT CCCAGTCCGG ATAAGAAAGT GAGCTAGGTT
  GAAGAGTCCT TTTTTTCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355357859	MGP_WTSI_2_115890445	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220152164					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355357859	MGP_WTSI_2_115890445	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:115895190 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2700033N17Rik	RIKEN cDNA 2700033N17 gene			1480 bp downstream
Cpgi12067	CpG island 12067			within coordinates
Cpgi12068	CpG island 12068			823 bp proximal
Cpgi12069	CpG island 12069			1828 bp proximal
Meis2	Meis homeobox 2			Intron
				mRNA-UTR
Rr562985	regulatory region 562985			81 bp distal
Rr562986	regulatory region 562986			2 bp proximal
Rr562987	regulatory region 562987			1120 bp proximal
Rr562988	regulatory region 562988			1983 bp proximal
Tssr25720	transcription start site region 25720			809 bp upstream
Tssr25721	transcription start site region 25721			111 bp upstream
Tssr25722	transcription start site region 25722			24 bp downstream
Tssr25723	transcription start site region 25723			50 bp downstream
Tssr25724	transcription start site region 25724			419 bp downstream
Tssr25725	transcription start site region 25725			508 bp downstream
Tssr25726	transcription start site region 25726			936 bp downstream
Tssr25727	transcription start site region 25727			964 bp downstream
Tssr25728	transcription start site region 25728			982 bp downstream
Tssr25729	transcription start site region 25729			1009 bp downstream
Tssr25730	transcription start site region 25730			1076 bp downstream
Tssr25731	transcription start site region 25731			1089 bp downstream
Tssr25732	transcription start site region 25732			1235 bp downstream
Tssr25733	transcription start site region 25733			1325 bp downstream