rs220133670 SNP Detail

Summary

• ID
  rs220133670
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109333212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGAAAAC CATGTCATCC
  TCAACTCCAC AAGCTAAACT ACTAGGCACC GAAGGGGATA AGATCACACA CTCGATTCCT
  GAACTCAAGG ACAGAAGACC GTCCTCAACC CGTGCCCAAG GGGATGCCCA GAAGGACCCT
  TTTCCATTTG GGAACCGGGC AGCAGACACC CTCAAGGCCA GCCCTGAAGG GGTCAACGCC
  A
  CCCCCCCCCC ACCCACCCCC GGTCTAGGCC GTGGAGGCCA AGGGCAGAGG GCCCGAGCCG
  CCTCCTCTCG CACGCCGACA CACACCCTCC CTACCTGATA TGGCGGCGGC GGCTCCTGAT
  CTGGCTCCGT CCCCTCGCCA AAGCTAGCCC GGTCGGACTG AGACTCGTGA AGCAGGGAGA
  TGTCATCCGA AGTCGGGGAT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss362802671	MGP_WTSI_4_109148620	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs220133670					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362802671	MGP_WTSI_4_109148620	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109333212 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14574	CpG island 14574	within coordinates
Rnf11	ring finger protein 11	Intron
Rr597332	regulatory region 597332	650 bp proximal
Rr597333	regulatory region 597333	814 bp proximal
Tssr38352	transcription start site region 38352	165 bp downstream
Tssr38353	transcription start site region 38353	114 bp downstream
Tssr42763	transcription start site region 42763	250 bp downstream
Tssr42764	transcription start site region 42764	413 bp downstream
Tssr42765	transcription start site region 42765	438 bp downstream
Tssr42766	transcription start site region 42766	467 bp downstream
Tssr42767	transcription start site region 42767	582 bp downstream
Tssr42768	transcription start site region 42768	593 bp downstream
Tssr42769	transcription start site region 42769	651 bp downstream