rs220130460 SNP Detail

Summary

• ID
  rs220130460
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101223938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTACCTGTG AAACTTTTAA TGTTAATCat
  ttaaaaatta attattttat GTTTATGGGT GCTTTGCCTG CATCTATTAT ATATAGGGAA
  TGGGTGAAGT CCCGAGAGAC TGAAGTCCCG AAGGAGTGGG TACCGAGTGA CCTGGGTTGG
  Y
  CATGTCAAGG ACATGGAATC GACCTAAGAG AAACTGGGGA TGTCTTTCCT CCAGGGCAGG
  TTTGGAAAGG CAAAGCCTTC CTTTACCCAA ATATGTGACT CGTGTGTACA AAACCTGGCA
  ACTTCAGCTT CCTCCTCCCT TGTGTTTACA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320851824	CHEV_3_101120545	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220130460					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101223938 () rs orientation: forward

Symbol	Name	Function Class
Gm64409	predicted gene, 64409	1778 bp upstream
Rr375462	regulatory region 375462	1499 bp downstream
Rr582007	regulatory region 582007	1474 bp proximal
Rr582008	regulatory region 582008	1597 bp proximal
Rr582009	regulatory region 582009	1682 bp proximal
Rr582010	regulatory region 582010	1789 bp proximal